STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ARD21262.1Methylation site containing protein. (165 aa)    
Predicted Functional Partners:
ARD20778.1
MSHA biogenesis protein MshJ.
 
     0.778
ARD20780.1
MSHA biogenesis protein MshL; Pfam:pfam00263 Bacterial type II and III secretion system protein.
 
  
 0.777
ARD20791.1
MSHA biogenesis protein MshO.
 
   
 0.775
ARD20776.1
Hypothetical protein.
 
   
 0.770
ARD20790.1
MSHA pilin protein MshD.
 
   
 0.763
ARD20777.1
MSHA biogenesis protein MshI.
 
  
 0.724
ARD20792.1
MSHA biogenesis protein MshP.
 
     0.712
ARD20784.1
MSHA biogenesis protein MshG; Pfam:pfam00482 Type II secretion system (T2SS), protein F.
 
    0.704
ARD20782.1
MSHA biogenesis protein MshN; Pfam:pfam14559 Tetratricopeptide repeat.
 
     0.679
ARD20783.1
MSHA biogenesis protein MshE; Pfam:pfam00437 Type II/IV secretion system protein.
 
   0.670
Your Current Organism:
Shewanella japonica
NCBI taxonomy Id: 93973
Other names: ATCC BAA-316, CIP 106860, CIP 107849 [[Shewanella pacifica]], DSM 15445 [[Shewanella pacifica]], JCM 21433, KCTC 22435, KMM 3299, KMM 3597 [[Shewanella pacifica]], LMG 19691, LMG:19691, NBRC 103171, S. japonica, Shewanella japonica Ivanova et al. 2001 emend. Thorell et al. 2019, Shewanella pacifica, Shewanella pacifica Ivanova et al. 2004, Shewanella sp. KMM3299, strain R10SW1 [[Shewanella pacifica]]
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.