STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ARD21272.1LysR family transcriptional regulator; Pfam:pfam03466 LysR substrate binding domain. (315 aa)    
Predicted Functional Partners:
ARD23544.1
LysR family transcriptional regulator; Pfam:pfam03466 LysR substrate binding domain.
  
     0.757
ARD24094.1
LysR family transcriptional regulator; Pfam:pfam03466 LysR substrate binding domain.
  
     0.642
ARD22771.1
LysR family transcriptional regulator; Pfam:pfam03466 LysR substrate binding domain.
  
     0.631
ARD21924.1
Pfam:pfam00126 Bacterial regulatory helix-turn-helix protein, lysR family.
  
     0.625
ARD23919.1
LysR family transcriptional regulator; Pfam:pfam03466 LysR substrate binding domain.
  
     0.625
ARD21274.1
Sodium-dependent bicarbonate transport family permease; Pfam:pfam05982 Domain of unknown function (DUF897).
 
     0.619
ARD21055.1
LysR family transcriptional regulator; Pfam:pfam03466 LysR substrate binding domain.
  
     0.615
ARD24161.1
LysR family transcriptional regulator; Pfam:pfam03466 LysR substrate binding domain.
  
     0.604
ARD21267.1
Pfam:pfam00126 Bacterial regulatory helix-turn-helix protein, lysR family.
  
     0.570
ARD21636.1
LysR family transcriptional regulator; Pfam:pfam03466 LysR substrate binding domain.
  
     0.570
Your Current Organism:
Shewanella japonica
NCBI taxonomy Id: 93973
Other names: ATCC BAA-316, CIP 106860, CIP 107849 [[Shewanella pacifica]], DSM 15445 [[Shewanella pacifica]], JCM 21433, KCTC 22435, KMM 3299, KMM 3597 [[Shewanella pacifica]], LMG 19691, LMG:19691, NBRC 103171, S. japonica, Shewanella japonica Ivanova et al. 2001 emend. Thorell et al. 2019, Shewanella pacifica, Shewanella pacifica Ivanova et al. 2004, Shewanella sp. KMM3299, strain R10SW1 [[Shewanella pacifica]]
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