STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ARD21360.1Hypothetical protein. (1109 aa)    
Predicted Functional Partners:
ARD21362.1
AraC family transcriptional regulator.
 
     0.953
ARD21359.1
Hypothetical protein; Pfam:pfam13414 TPR repeat.
 
     0.949
ARD21368.1
Hypothetical protein.
 
  
 0.931
ARD21363.1
Pfam:pfam12094 Protein of unknown function (DUF3570).
 
     0.928
ARD21364.1
Hypothetical protein; Pfam:pfam14086 Domain of unknown function (DUF4266).
 
     0.927
ARD21355.1
RNA polymerase subunit sigma-70; Pfam:pfam02472 Biopolymer transport protein ExbD/TolR.
 
  
 0.907
ARD21356.1
Pfam:pfam02472 Biopolymer transport protein ExbD/TolR.
 
  
 0.907
ARD21354.1
Hypothetical protein.
 
   
 0.901
ARD21357.1
Flagellar motor protein MotA; Pfam:pfam01618 MotA/TolQ/ExbB proton channel family.
 
  
 0.892
ARD21366.1
Hypothetical protein.
 
     0.888
Your Current Organism:
Shewanella japonica
NCBI taxonomy Id: 93973
Other names: ATCC BAA-316, CIP 106860, CIP 107849 [[Shewanella pacifica]], DSM 15445 [[Shewanella pacifica]], JCM 21433, KCTC 22435, KMM 3299, KMM 3597 [[Shewanella pacifica]], LMG 19691, LMG:19691, NBRC 103171, S. japonica, Shewanella japonica Ivanova et al. 2001 emend. Thorell et al. 2019, Shewanella pacifica, Shewanella pacifica Ivanova et al. 2004, Shewanella sp. KMM3299, strain R10SW1 [[Shewanella pacifica]]
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.