STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ARD21408.1MFS transporter; Pfam:pfam07690 Major Facilitator Superfamily. (432 aa)    
Predicted Functional Partners:
ARD21410.1
Pfam:pfam05426 Alginate lyase.
 
    0.952
ARD21411.1
poly(beta-D-mannuronate) lyase; Pfam:pfam14592 Chondroitinase B.
 
    0.952
ARD21409.1
Pectin degradation protein kdgF; Pfam:pfam07883 Cupin domain.
 
     0.949
ARD21413.1
Pfam:pfam00392 Bacterial regulatory proteins, gntR family.
 
   
 0.804
ARD24077.1
Pfam:pfam08787 Alginate lyase.
  
     0.737
ARD24076.1
Pfam:pfam00593 TonB dependent receptor.
  
    0.732
ARD21407.1
Ketodeoxygluconokinase; Pfam:pfam00294 pfkB family carbohydrate kinase.
 
  
 0.711
ARD21278.1
Cyclic nucleotide-binding domain-containing protein; Pfam:pfam08787 Alginate lyase.
  
     0.708
ARD21110.1
Iron ABC transporter substrate-binding protein; Pfam:pfam13343 Bacterial extracellular solute-binding protein.
  
  
 0.707
ARD22244.1
GntR family transcriptional regulator; Pfam:pfam07729 FCD domain.
 
   
 0.474
Your Current Organism:
Shewanella japonica
NCBI taxonomy Id: 93973
Other names: ATCC BAA-316, CIP 106860, CIP 107849 [[Shewanella pacifica]], DSM 15445 [[Shewanella pacifica]], JCM 21433, KCTC 22435, KMM 3299, KMM 3597 [[Shewanella pacifica]], LMG 19691, LMG:19691, NBRC 103171, S. japonica, Shewanella japonica Ivanova et al. 2001 emend. Thorell et al. 2019, Shewanella pacifica, Shewanella pacifica Ivanova et al. 2004, Shewanella sp. KMM3299, strain R10SW1 [[Shewanella pacifica]]
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