STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ARD21508.1RNA polymerase sigma factor RpoD; Pfam:pfam04546 Sigma-70, non-essential region. (610 aa)    
Predicted Functional Partners:
ARD24233.1
DNA-directed RNA polymerase subunit beta; Pfam:pfam00562 RNA polymerase Rpb2, domain 6.
 
 0.979
ARD24202.1
DNA-directed RNA polymerase subunit alpha; Pfam:pfam01193 RNA polymerase Rpb3/Rpb11 dimerization domain.
 
 0.967
ARD24232.1
DNA-directed RNA polymerase subunit beta; Pfam:pfam04997 RNA polymerase Rpb1, domain 1.
 
 0.959
ARD20691.1
DNA-directed RNA polymerase subunit omega; Pfam:pfam01192 RNA polymerase Rpb6.
 
 
 0.944
ARD23431.1
NusA antitermination factor; Pfam:pfam08529 NusA N-terminal domain.
 
 
 0.938
ARD21509.1
DNA primase; Pfam:pfam01807 CHC2 zinc finger.
 
  
 0.932
ARD23971.1
Pfam:pfam04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ.
   
 0.915
ARD23797.1
Transcriptional regulator Crp; Pfam:pfam00027 Cyclic nucleotide-binding domain.
    
 
 0.856
ARD23957.1
Zinc-responsive transcriptional regulator; Pfam:pfam13411 MerR HTH family regulatory protein.
 
 
 0.838
ARD23777.1
RNA polymerase-binding transcription factor DksA; Pfam:pfam01258 Prokaryotic dksA/traR C4-type zinc finger.
  
 
 
 0.837
Your Current Organism:
Shewanella japonica
NCBI taxonomy Id: 93973
Other names: ATCC BAA-316, CIP 106860, CIP 107849 [[Shewanella pacifica]], DSM 15445 [[Shewanella pacifica]], JCM 21433, KCTC 22435, KMM 3299, KMM 3597 [[Shewanella pacifica]], LMG 19691, LMG:19691, NBRC 103171, S. japonica, Shewanella japonica Ivanova et al. 2001 emend. Thorell et al. 2019, Shewanella pacifica, Shewanella pacifica Ivanova et al. 2004, Shewanella sp. KMM3299, strain R10SW1 [[Shewanella pacifica]]
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.