STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ARD21530.1Anhydro-N-acetylmuramic acid kinase; Pfam:pfam03702 Uncharacterized protein family (UPF0075). (391 aa)    
Predicted Functional Partners:
ARD21531.1
Pfam:pfam01551 Peptidase family M23.
 
    0.688
ARD22797.1
beta-N-acetylhexosaminidase; Pfam:pfam00933 Glycosyl hydrolase family 3 N terminal domain.
 
   
 0.597
ARD20755.1
Pfam:pfam01510 N-acetylmuramoyl-L-alanine amidase.
  
   
 0.558
ARD23391.1
Riboflavin biosynthesis protein RibD; Pfam:pfam01872 RibD C-terminal domain.
     
 0.456
ARD21529.1
Aquaporin; Pfam:pfam00230 Major intrinsic protein.
       0.447
ARD21532.1
Tyrosine--tRNA ligase; Pfam:pfam00579 tRNA synthetases class I (W and Y).
       0.444
ARD21618.1
N-acetylglucosamine-6-phosphate deacetylase; Pfam:pfam13147 Amidohydrolase.
 
   
 0.405
Your Current Organism:
Shewanella japonica
NCBI taxonomy Id: 93973
Other names: ATCC BAA-316, CIP 106860, CIP 107849 [[Shewanella pacifica]], DSM 15445 [[Shewanella pacifica]], JCM 21433, KCTC 22435, KMM 3299, KMM 3597 [[Shewanella pacifica]], LMG 19691, LMG:19691, NBRC 103171, S. japonica, Shewanella japonica Ivanova et al. 2001 emend. Thorell et al. 2019, Shewanella pacifica, Shewanella pacifica Ivanova et al. 2004, Shewanella sp. KMM3299, strain R10SW1 [[Shewanella pacifica]]
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