STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ARD21572.1Pfam:pfam01245 Ribosomal protein L19. (117 aa)    
Predicted Functional Partners:
ARD21569.1
Pfam:pfam00886 Ribosomal protein S16.
 
 
 0.996
ARD21426.1
Pfam:pfam01016 Ribosomal L27 protein.
 
 
 0.994
ARD24236.1
Pfam:pfam00687 Ribosomal protein L1p/L10e family.
 
 
 0.994
ARD21425.1
Pfam:pfam00829 Ribosomal prokaryotic L21 protein.
 
 
 0.992
ARD21571.1
Pfam:pfam01746 tRNA (Guanine-1)-methyltransferase.
 
  
 0.992
ARD22327.1
Pfam:pfam00453 Ribosomal protein L20.
 
 
 0.992
ARD23859.1
Pfam:pfam01084 Ribosomal protein S18.
  
 
 0.991
ARD24230.1
Pfam:pfam00177 Ribosomal protein S7p/S5e.
  
 
 0.991
ARD24234.1
Pfam:pfam00542 Ribosomal protein L7/L12 C-terminal domain.
 
 
 0.991
ARD21725.1
Pfam:pfam00318 Ribosomal protein S2.
 
 
 0.990
Your Current Organism:
Shewanella japonica
NCBI taxonomy Id: 93973
Other names: ATCC BAA-316, CIP 106860, CIP 107849 [[Shewanella pacifica]], DSM 15445 [[Shewanella pacifica]], JCM 21433, KCTC 22435, KMM 3299, KMM 3597 [[Shewanella pacifica]], LMG 19691, LMG:19691, NBRC 103171, S. japonica, Shewanella japonica Ivanova et al. 2001 emend. Thorell et al. 2019, Shewanella pacifica, Shewanella pacifica Ivanova et al. 2004, Shewanella sp. KMM3299, strain R10SW1 [[Shewanella pacifica]]
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.