STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ARD21580.1Transcriptional regulator; Pfam:pfam01371 Trp repressor protein. (91 aa)    
Predicted Functional Partners:
ARD23029.1
Pfam:pfam00717 Peptidase S24-like.
   
    0.842
ARD22814.1
Pfam:pfam06185 YecM protein.
  
     0.737
ARD20548.1
Pfam:pfam03222 Tryptophan/tyrosine permease family.
 
   
 0.729
ARD23683.1
Pfam:pfam06062 Uncharacterized protein family (UPF0231).
  
     0.725
ARD21074.1
Aromatic amino acid permease; Pfam:pfam03222 Tryptophan/tyrosine permease family.
  
   
 0.704
ARD21456.1
Cytochrome C.
  
     0.624
ARD22416.1
Pfam:pfam06305 Protein of unknown function (DUF1049).
  
     0.617
ARD20512.1
Pfam:pfam11854 Protein of unknown function (DUF3374).
  
    0.606
ARD21856.1
Pfam:pfam11854 Protein of unknown function (DUF3374).
  
    0.600
ARD22558.1
Pfam:pfam03776 Septum formation topological specificity factor MinE.
   
    0.590
Your Current Organism:
Shewanella japonica
NCBI taxonomy Id: 93973
Other names: ATCC BAA-316, CIP 106860, CIP 107849 [[Shewanella pacifica]], DSM 15445 [[Shewanella pacifica]], JCM 21433, KCTC 22435, KMM 3299, KMM 3597 [[Shewanella pacifica]], LMG 19691, LMG:19691, NBRC 103171, S. japonica, Shewanella japonica Ivanova et al. 2001 emend. Thorell et al. 2019, Shewanella pacifica, Shewanella pacifica Ivanova et al. 2004, Shewanella sp. KMM3299, strain R10SW1 [[Shewanella pacifica]]
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.