STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ARD21630.1Fe(2+)-trafficking protein; Pfam:pfam04362 Bacterial Fe(2+) trafficking. (92 aa)    
Predicted Functional Partners:
ARD21631.1
A/G-specific adenine glycosylase; Pfam:pfam00730 HhH-GPD superfamily base excision DNA repair protein.
  
  
 0.813
ARD23375.1
Cell division protein FtsB; Pfam:pfam04977 Septum formation initiator.
  
     0.662
ARD23809.1
Pfam:pfam04386 Stringent starvation protein B.
  
     0.651
ARD22500.1
Pfam:pfam03548 Outer membrane lipoprotein carrier protein LolA.
  
     0.646
ARD20737.1
Pfam:pfam03799 Cell division protein FtsQ.
  
     0.619
ARD21433.1
Bis(5'-nucleosyl)-tetraphosphatase; Pfam:pfam00149 Calcineurin-like phosphoesterase.
  
     0.575
ARD21339.1
Pfam:pfam06144 DNA polymerase III, delta subunit.
  
   
 0.529
ARD23328.1
Cell envelope protein SmpA; Pfam:pfam04355 SmpA / OmlA family.
  
    0.521
ARD21519.1
Multifunctional CCA protein; Pfam:pfam01743 Poly A polymerase head domain.
  
     0.520
ARD24027.1
Iron donor protein CyaY; Pfam:pfam01491 Frataxin-like domain.
  
   
 0.516
Your Current Organism:
Shewanella japonica
NCBI taxonomy Id: 93973
Other names: ATCC BAA-316, CIP 106860, CIP 107849 [[Shewanella pacifica]], DSM 15445 [[Shewanella pacifica]], JCM 21433, KCTC 22435, KMM 3299, KMM 3597 [[Shewanella pacifica]], LMG 19691, LMG:19691, NBRC 103171, S. japonica, Shewanella japonica Ivanova et al. 2001 emend. Thorell et al. 2019, Shewanella pacifica, Shewanella pacifica Ivanova et al. 2004, Shewanella sp. KMM3299, strain R10SW1 [[Shewanella pacifica]]
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.