STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ARD21632.1tRNA (guanine-N(7)-)-methyltransferase; Pfam:pfam02390 Putative methyltransferase. (238 aa)    
Predicted Functional Partners:
ARD22497.1
Serine--tRNA ligase; Pfam:pfam00587 tRNA synthetase class II core domain (G, H, P, S and T).
   
 0.906
ARD23428.1
Pfam:pfam01509 TruB family pseudouridylate synthase (N terminal domain).
  
 
 0.884
ARD24208.1
Pfam:pfam00327 Ribosomal protein L30p/L7e.
   
    0.802
ARD23372.1
Pfam:pfam01142 tRNA pseudouridine synthase D (TruD).
 
 
 0.781
ARD20373.1
Ribosomal RNA small subunit methyltransferase B; Pfam:pfam01189 NOL1/NOP2/sun family.
 
 
 0.750
ARD23398.1
Hypothetical protein; Pfam:pfam01936 NYN domain.
  
  
 0.742
ARD23438.1
Ribosomal RNA large subunit methyltransferase E; Pfam:pfam01728 FtsJ-like methyltransferase.
   
 
 0.693
ARD21633.1
Pfam:pfam04320 Protein with unknown function (DUF469).
  
    0.670
ARD21634.1
Glutaminase; Pfam:pfam04960 Glutaminase.
       0.639
ARD21435.1
Pfam:pfam00398 Ribosomal RNA adenine dimethylase.
  
  
 0.605
Your Current Organism:
Shewanella japonica
NCBI taxonomy Id: 93973
Other names: ATCC BAA-316, CIP 106860, CIP 107849 [[Shewanella pacifica]], DSM 15445 [[Shewanella pacifica]], JCM 21433, KCTC 22435, KMM 3299, KMM 3597 [[Shewanella pacifica]], LMG 19691, LMG:19691, NBRC 103171, S. japonica, Shewanella japonica Ivanova et al. 2001 emend. Thorell et al. 2019, Shewanella pacifica, Shewanella pacifica Ivanova et al. 2004, Shewanella sp. KMM3299, strain R10SW1 [[Shewanella pacifica]]
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.