STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ARD21672.1Nucleoside-diphosphate sugar epimerase; Pfam:pfam02719 Polysaccharide biosynthesis protein. (643 aa)    
Predicted Functional Partners:
ARD22669.1
Hypothetical protein; Pfam:pfam13614 AAA domain.
  
  
 0.868
ARD21668.1
Acetyltransferase.
 
  
 0.864
ARD21669.1
Aminotransferase; Pfam:pfam01041 DegT/DnrJ/EryC1/StrS aminotransferase family.
 
  
 0.853
ARD21664.1
Capsular biosynthesis protein; Pfam:pfam01370 NAD dependent epimerase/dehydratase family.
 
  
 0.828
ARD23263.1
UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine transaminase; Pfam:pfam01041 DegT/DnrJ/EryC1/StrS aminotransferase family.
 
  
 0.809
ARD21667.1
Pfam:pfam02397 Bacterial sugar transferase.
 
  
 0.782
ARD21658.1
Pfam:pfam01041 DegT/DnrJ/EryC1/StrS aminotransferase family.
  
  
 0.686
ARD22532.1
Pfam:pfam01041 DegT/DnrJ/EryC1/StrS aminotransferase family.
 
  
 0.674
ARD21666.1
Glycosyltransferase WbuB; Pfam:pfam13579 Glycosyl transferase 4-like domain.
 
  
 0.671
ARD20629.1
Pfam:pfam02119 Flagellar P-ring protein.
  
  
 0.659
Your Current Organism:
Shewanella japonica
NCBI taxonomy Id: 93973
Other names: ATCC BAA-316, CIP 106860, CIP 107849 [[Shewanella pacifica]], DSM 15445 [[Shewanella pacifica]], JCM 21433, KCTC 22435, KMM 3299, KMM 3597 [[Shewanella pacifica]], LMG 19691, LMG:19691, NBRC 103171, S. japonica, Shewanella japonica Ivanova et al. 2001 emend. Thorell et al. 2019, Shewanella pacifica, Shewanella pacifica Ivanova et al. 2004, Shewanella sp. KMM3299, strain R10SW1 [[Shewanella pacifica]]
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