STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ARD21715.1Pfam:pfam12069 Protein of unknown function (DUF3549). (341 aa)    
Predicted Functional Partners:
ARD21714.1
Pfam:pfam11743 Protein of unknown function (DUF3301).
 
     0.904
ARD23245.1
Hypothetical protein.
  
     0.645
ARD22287.1
Pfam:pfam10981 Protein of unknown function (DUF2788).
  
     0.633
ARD22540.1
Hypothetical protein; Pfam:pfam09842 Predicted membrane protein (DUF2069).
  
     0.633
ARD21783.1
Pfam:pfam11201 Protein of unknown function (DUF2982).
  
     0.627
ARD23275.1
Pfam:pfam11163 Protein of unknown function (DUF2947).
  
     0.624
ARD20393.1
Pfam:pfam10675 Protein of unknown function (DUF2489).
  
     0.617
ARD21716.1
Hypothetical protein; Pfam:pfam04287 tRNA pseudouridine synthase C.
       0.594
ARD21717.1
Pfam:pfam00849 RNA pseudouridylate synthase.
       0.585
ARD22142.1
Fis family transcriptional regulator.
  
     0.566
Your Current Organism:
Shewanella japonica
NCBI taxonomy Id: 93973
Other names: ATCC BAA-316, CIP 106860, CIP 107849 [[Shewanella pacifica]], DSM 15445 [[Shewanella pacifica]], JCM 21433, KCTC 22435, KMM 3299, KMM 3597 [[Shewanella pacifica]], LMG 19691, LMG:19691, NBRC 103171, S. japonica, Shewanella japonica Ivanova et al. 2001 emend. Thorell et al. 2019, Shewanella pacifica, Shewanella pacifica Ivanova et al. 2004, Shewanella sp. KMM3299, strain R10SW1 [[Shewanella pacifica]]
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.