STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ARD21731.11-deoxy-D-xylulose 5-phosphate reductoisomerase; Pfam:pfam13288 DXP reductoisomerase C-terminal domain. (396 aa)    
Predicted Functional Partners:
ARD23374.1
Pfam:pfam01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase.
 
  
 0.985
ARD23172.1
Pfam:pfam13292 1-deoxy-D-xylulose-5-phosphate synthase.
 
 
 0.984
ARD21729.1
Di-trans,poly-cis-decaprenylcistransferase; Pfam:pfam01255 Putative undecaprenyl diphosphate synthase.
  
  
 0.974
ARD21730.1
Pfam:pfam01148 Cytidylyltransferase family.
  
  
 0.967
ARD21732.1
RIP metalloprotease RseP; Pfam:pfam02163 Peptidase family M50.
  
  
 0.913
ARD23373.1
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Pfam:pfam02542 YgbB family.
 
   
 0.858
ARD21602.1
4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Pfam:pfam02401 LytB protein.
 
   
 0.853
ARD23309.1
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Pfam:pfam04551 GcpE protein.
 
   
 0.853
ARD21375.1
Pfam:pfam00288 GHMP kinases N terminal domain.
 
   
 0.849
ARD21728.1
Pfam:pfam01765 Ribosome recycling factor.
  
  
 0.745
Your Current Organism:
Shewanella japonica
NCBI taxonomy Id: 93973
Other names: ATCC BAA-316, CIP 106860, CIP 107849 [[Shewanella pacifica]], DSM 15445 [[Shewanella pacifica]], JCM 21433, KCTC 22435, KMM 3299, KMM 3597 [[Shewanella pacifica]], LMG 19691, LMG:19691, NBRC 103171, S. japonica, Shewanella japonica Ivanova et al. 2001 emend. Thorell et al. 2019, Shewanella pacifica, Shewanella pacifica Ivanova et al. 2004, Shewanella sp. KMM3299, strain R10SW1 [[Shewanella pacifica]]
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.