STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ARD21752.1Capsular biosynthesis protein. (427 aa)    
Predicted Functional Partners:
ARD21754.1
Sugar transporter; Pfam:pfam02563 Polysaccharide biosynthesis/export protein.
 
  
 0.963
ARD21753.1
Hypothetical protein.
 
  
 0.956
ARD22672.1
Undecaprenyl-phosphate glucose phosphotransferase; Pfam:pfam02397 Bacterial sugar transferase.
  
  
 0.862
ARD21750.1
Pfam:pfam01943 Polysaccharide biosynthesis protein.
 
  
 0.823
ARD21749.1
Pfam:pfam00535 Glycosyl transferase family 2.
 
  
 0.786
ARD21748.1
Undecaprenyl-phosphate galactose phosphotransferase; Pfam:pfam02397 Bacterial sugar transferase.
 
  
 0.673
ARD21755.1
Hypothetical protein; Pfam:pfam01740 STAS domain.
       0.601
ARD23934.1
Hypothetical protein; Pfam:pfam00534 Glycosyl transferases group 1.
 
  
 0.515
ARD22682.1
Pfam:pfam01757 Acyltransferase family.
  
    0.504
ARD21668.1
Acetyltransferase.
  
  
 0.494
Your Current Organism:
Shewanella japonica
NCBI taxonomy Id: 93973
Other names: ATCC BAA-316, CIP 106860, CIP 107849 [[Shewanella pacifica]], DSM 15445 [[Shewanella pacifica]], JCM 21433, KCTC 22435, KMM 3299, KMM 3597 [[Shewanella pacifica]], LMG 19691, LMG:19691, NBRC 103171, S. japonica, Shewanella japonica Ivanova et al. 2001 emend. Thorell et al. 2019, Shewanella pacifica, Shewanella pacifica Ivanova et al. 2004, Shewanella sp. KMM3299, strain R10SW1 [[Shewanella pacifica]]
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.