STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ARD21857.1Cytochrome c family protein; Pfam:pfam09699 Doubled CXXCH motif (Paired_CXXCH_1). (329 aa)    
Predicted Functional Partners:
ARD21856.1
Pfam:pfam11854 Protein of unknown function (DUF3374).
 
 
 0.999
ARD21858.1
Pfam:pfam13435 Cytochrome c554 and c-prime.
   
 
 0.995
ARD20512.1
Pfam:pfam11854 Protein of unknown function (DUF3374).
 
 
 0.863
ARD21456.1
Cytochrome C.
 
 
 0.821
ARD20557.1
Pfam:pfam03264 NapC/NirT cytochrome c family, N-terminal region.
  
   
 0.724
ARD23680.1
Ammonia-forming cytochrome c nitrite reductase, c552 subunit; Pfam:pfam02335 Cytochrome c552.
 
 
 0.724
ARD20841.1
Flavocytochrome c; Pfam:pfam00890 FAD binding domain.
  
   
 0.681
ARD21058.1
Pfam:pfam03892 Nitrate reductase cytochrome c-type subunit (NapB).
  
  
 0.643
ARD21930.1
Pfam:pfam03892 Nitrate reductase cytochrome c-type subunit (NapB).
  
  
 0.642
ARD20548.1
Pfam:pfam03222 Tryptophan/tyrosine permease family.
      
 0.621
Your Current Organism:
Shewanella japonica
NCBI taxonomy Id: 93973
Other names: ATCC BAA-316, CIP 106860, CIP 107849 [[Shewanella pacifica]], DSM 15445 [[Shewanella pacifica]], JCM 21433, KCTC 22435, KMM 3299, KMM 3597 [[Shewanella pacifica]], LMG 19691, LMG:19691, NBRC 103171, S. japonica, Shewanella japonica Ivanova et al. 2001 emend. Thorell et al. 2019, Shewanella pacifica, Shewanella pacifica Ivanova et al. 2004, Shewanella sp. KMM3299, strain R10SW1 [[Shewanella pacifica]]
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