STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ARD21875.1Hypothetical protein. (416 aa)    
Predicted Functional Partners:
ARD21872.1
Biopolymer transporter ExbB; Pfam:pfam01618 MotA/TolQ/ExbB proton channel family.
 
    0.954
ARD21874.1
Energy transducer TonB; Pfam:pfam03544 Gram-negative bacterial TonB protein C-terminal.
 
    0.954
ARD21870.1
Pfam:pfam11932 Protein of unknown function (DUF3450).
 
     0.940
ARD21871.1
Flagellar motor protein MotA; Pfam:pfam01618 MotA/TolQ/ExbB proton channel family.
 
    0.940
ARD21873.1
Pfam:pfam02472 Biopolymer transport protein ExbD/TolR.
 
    0.898
ARD21247.1
Hypothetical protein; Pfam:pfam03544 Gram-negative bacterial TonB protein C-terminal.
 
    0.765
ARD22441.1
Hypothetical protein.
  
     0.748
ARD21916.1
Lipase; Pfam:pfam12262 Bacterial virulence factor lipase N-terminal.
 
     0.728
ARD22613.1
Hypothetical protein; Pfam:pfam03544 Gram-negative bacterial TonB protein C-terminal.
  
     0.726
ARD21710.1
Pfam:pfam11399 Protein of unknown function (DUF3192).
  
     0.695
Your Current Organism:
Shewanella japonica
NCBI taxonomy Id: 93973
Other names: ATCC BAA-316, CIP 106860, CIP 107849 [[Shewanella pacifica]], DSM 15445 [[Shewanella pacifica]], JCM 21433, KCTC 22435, KMM 3299, KMM 3597 [[Shewanella pacifica]], LMG 19691, LMG:19691, NBRC 103171, S. japonica, Shewanella japonica Ivanova et al. 2001 emend. Thorell et al. 2019, Shewanella pacifica, Shewanella pacifica Ivanova et al. 2004, Shewanella sp. KMM3299, strain R10SW1 [[Shewanella pacifica]]
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.