STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ARD21896.1Hypothetical protein; Pfam:pfam12833 Helix-turn-helix domain. (292 aa)    
Predicted Functional Partners:
ARD24202.1
DNA-directed RNA polymerase subunit alpha; Pfam:pfam01193 RNA polymerase Rpb3/Rpb11 dimerization domain.
    
 
 0.613
ARD21895.1
HAD family hydrolase; Pfam:pfam12710 haloacid dehalogenase-like hydrolase.
       0.586
ARD21540.1
Hypothetical protein; Pfam:pfam04055 Radical SAM superfamily.
   
    0.483
ARD24344.1
AraC family transcriptional regulator; Pfam:pfam13278 Putative amidotransferase.
 
 
 0.447
ARD23679.1
Pfam:pfam04828 Glutathione-dependent formaldehyde-activating enzyme.
 
     0.423
ARD20398.1
Pfam:pfam00476 DNA polymerase family A.
     
 0.404
ARD21894.1
PpiC-type peptidyl-prolyl cis-trans isomerase; Pfam:pfam00639 PPIC-type PPIASE domain.
       0.402
Your Current Organism:
Shewanella japonica
NCBI taxonomy Id: 93973
Other names: ATCC BAA-316, CIP 106860, CIP 107849 [[Shewanella pacifica]], DSM 15445 [[Shewanella pacifica]], JCM 21433, KCTC 22435, KMM 3299, KMM 3597 [[Shewanella pacifica]], LMG 19691, LMG:19691, NBRC 103171, S. japonica, Shewanella japonica Ivanova et al. 2001 emend. Thorell et al. 2019, Shewanella pacifica, Shewanella pacifica Ivanova et al. 2004, Shewanella sp. KMM3299, strain R10SW1 [[Shewanella pacifica]]
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.