Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ARD21976.1Membrane protein; Pfam:pfam00691 OmpA family. (289 aa)    
Predicted Functional Partners:
ARD23216.1
Pfam:pfam08345 Flagellar M-ring protein C-terminal.
 
 
 0.963
ARD20646.1
Flagellar motor protein MotB; Pfam:pfam00691 OmpA family.
  
  
 
0.926
ARD23168.1
Flagellar motor protein MotB; Pfam:pfam13677 Membrane MotB of proton-channel complex MotA/MotB.
  
 
 0.896
ARD23245.1
Hypothetical protein.
  
 
 
 0.838
ARD23865.1
Flagellar protein MotX.
  
 
 0.834
ARD24188.1
Hypothetical protein.
  
 
 
 0.811
ARD22751.1
Pfam:pfam09850 Uncharacterized protein conserved in bacteria (DUF2077).
  
 0.807
ARD23243.1
Flagellar biosynthesis protein FlgP; Pfam:pfam02169 LPP20 lipoprotein.
  
 
 
 0.803
ARD24185.1
Pfam:pfam02169 LPP20 lipoprotein.
  
 
 
 0.771
ARD21981.1
Translocation protein TolB; Pfam:pfam04052 TolB amino-terminal domain.
  
 
 0.729
Your Current Organism:
Shewanella japonica
NCBI taxonomy Id: 93973
Other names: ATCC BAA-316, CIP 106860, CIP 107849 [[Shewanella pacifica]], DSM 15445 [[Shewanella pacifica]], JCM 21433, KCTC 22435, KMM 3299, KMM 3597 [[Shewanella pacifica]], LMG 19691, LMG:19691, NBRC 103171, S. japonica, Shewanella japonica Ivanova et al. 2001 emend. Thorell et al. 2019, Shewanella pacifica, Shewanella pacifica Ivanova et al. 2004, Shewanella sp. KMM3299, strain R10SW1 [[Shewanella pacifica]]
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