STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ARD22142.1Fis family transcriptional regulator. (111 aa)    
Predicted Functional Partners:
ARD23699.1
Pfam:pfam09493 Tryptophan-rich protein (DUF2389).
 
     0.726
ARD21715.1
Pfam:pfam12069 Protein of unknown function (DUF3549).
  
     0.566
ARD23043.1
tRNA/rRNA methyltransferase; Pfam:pfam00588 SpoU rRNA Methylase family.
  
     0.499
ARD22140.1
Efflux transporter periplasmic adaptor subunit; Pfam:pfam12700 HlyD family secretion protein.
       0.489
ARD22141.1
Multidrug transporter AcrB; Pfam:pfam00873 AcrB/AcrD/AcrF family.
       0.489
ARD21866.1
Pfam:pfam00136 DNA polymerase family B.
  
     0.477
ARD22404.1
Hypothetical protein.
  
     0.455
ARD21090.1
ATP synthase F0 subunit A; Pfam:pfam03994 Domain of Unknown Function (DUF350).
  
     0.449
ARD23072.1
Hypothetical protein.
  
     0.419
ARD22688.1
YceI family protein; Pfam:pfam04264 YceI-like domain.
  
     0.417
Your Current Organism:
Shewanella japonica
NCBI taxonomy Id: 93973
Other names: ATCC BAA-316, CIP 106860, CIP 107849 [[Shewanella pacifica]], DSM 15445 [[Shewanella pacifica]], JCM 21433, KCTC 22435, KMM 3299, KMM 3597 [[Shewanella pacifica]], LMG 19691, LMG:19691, NBRC 103171, S. japonica, Shewanella japonica Ivanova et al. 2001 emend. Thorell et al. 2019, Shewanella pacifica, Shewanella pacifica Ivanova et al. 2004, Shewanella sp. KMM3299, strain R10SW1 [[Shewanella pacifica]]
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.