STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ARD22320.1Beta-xylanase; Pfam:pfam00331 Glycosyl hydrolase family 10. (978 aa)    
Predicted Functional Partners:
ARD21162.1
Hypothetical protein; Pfam:pfam00457 Glycosyl hydrolases family 11.
 
   
 0.856
ARD22311.1
alpha-N-arabinofuranosidase; Pfam:pfam04616 Glycosyl hydrolases family 43.
 
  
 0.828
ARD23721.1
Pfam:pfam00759 Glycosyl hydrolase family 9.
 
   
 0.746
ARD22122.1
Xylan 1,4-beta-xylosidase; Pfam:pfam04616 Glycosyl hydrolases family 43.
 
  
 0.745
ARD21922.1
Arylesterase; Pfam:pfam13472 GDSL-like Lipase/Acylhydrolase family.
  
 
 0.704
ARD22949.1
Hypothetical protein; Pfam:pfam13472 GDSL-like Lipase/Acylhydrolase family.
  
 
 0.704
ARD21769.1
Beta-glucosidase; Pfam:pfam00933 Glycosyl hydrolase family 3 N terminal domain.
 
   
 0.679
ARD21627.1
Cellobionic acid phosphorylase; Pfam:pfam06165 Glycosyltransferase family 36.
 
   
 0.653
ARD21405.1
Pfam:pfam10974 Protein of unknown function (DUF2804).
  
 
 0.639
ARD21778.1
Beta-glucosidase; Pfam:pfam00232 Glycosyl hydrolase family 1.
 
   
 0.588
Your Current Organism:
Shewanella japonica
NCBI taxonomy Id: 93973
Other names: ATCC BAA-316, CIP 106860, CIP 107849 [[Shewanella pacifica]], DSM 15445 [[Shewanella pacifica]], JCM 21433, KCTC 22435, KMM 3299, KMM 3597 [[Shewanella pacifica]], LMG 19691, LMG:19691, NBRC 103171, S. japonica, Shewanella japonica Ivanova et al. 2001 emend. Thorell et al. 2019, Shewanella pacifica, Shewanella pacifica Ivanova et al. 2004, Shewanella sp. KMM3299, strain R10SW1 [[Shewanella pacifica]]
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.