STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ARD22370.1Agarase. (788 aa)    
Predicted Functional Partners:
ARD22367.1
Pfam:pfam04616 Glycosyl hydrolases family 43.
 
 
 0.808
ARD21405.1
Pfam:pfam10974 Protein of unknown function (DUF2804).
   
 0.779
ARD22373.1
Beta-agarase; Pfam:pfam00652 Ricin-type beta-trefoil lectin domain.
 
   
 0.769
ARD20815.1
Pfam:pfam00450 Serine carboxypeptidase.
    
 0.767
ARD22229.1
Hypothetical protein; Pfam:pfam13517 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella.
  
     0.767
ARD22382.1
Hypothetical protein; Pfam:pfam07593 ASPIC and UnbV.
  
     0.767
ARD22365.1
Pfam:pfam07715 TonB-dependent Receptor Plug Domain.
  
     0.754
ARD22366.1
Hypothetical protein.
  
     0.744
ARD23100.1
IclR family transcriptional regulator; Pfam:pfam09339 IclR helix-turn-helix domain.
 
     0.736
ARD21278.1
Cyclic nucleotide-binding domain-containing protein; Pfam:pfam08787 Alginate lyase.
  
     0.735
Your Current Organism:
Shewanella japonica
NCBI taxonomy Id: 93973
Other names: ATCC BAA-316, CIP 106860, CIP 107849 [[Shewanella pacifica]], DSM 15445 [[Shewanella pacifica]], JCM 21433, KCTC 22435, KMM 3299, KMM 3597 [[Shewanella pacifica]], LMG 19691, LMG:19691, NBRC 103171, S. japonica, Shewanella japonica Ivanova et al. 2001 emend. Thorell et al. 2019, Shewanella pacifica, Shewanella pacifica Ivanova et al. 2004, Shewanella sp. KMM3299, strain R10SW1 [[Shewanella pacifica]]
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.