STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ARD22384.1Pfam:pfam00171 Aldehyde dehydrogenase family. (482 aa)    
Predicted Functional Partners:
ARD23362.1
Oxaloacetate decarboxylase alpha subunit; Pfam:pfam02436 Conserved carboxylase domain.
    
 0.920
ARD21442.1
Glycerate dehydrogenase; Pfam:pfam00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain.
 
 
 0.916
ARD22266.1
Pfam:pfam00224 Pyruvate kinase, barrel domain.
   
 0.912
ARD22921.1
Pfam:pfam02901 Pyruvate formate lyase.
  
 
 0.911
ARD20775.1
Malate dehydrogenase; Pfam:pfam03949 Malic enzyme, NAD binding domain.
   
 
 0.910
ARD23555.1
Malate dehydrogenase; Pfam:pfam03949 Malic enzyme, NAD binding domain.
   
 
 0.910
ARD21026.1
D-lactate dehydrogenase; Pfam:pfam00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain.
  
 
 0.903
ARD22609.1
Phosphoenolpyruvate synthase; Pfam:pfam01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain.
     
 0.903
ARD20758.1
Pyruvate dehydrogenase E1 component; Pfam:pfam00456 Transketolase, thiamine diphosphate binding domain.
     
 0.901
ARD20482.1
Glyoxalase; Pfam:pfam12681 Glyoxalase-like domain.
   
 
  0.900
Your Current Organism:
Shewanella japonica
NCBI taxonomy Id: 93973
Other names: ATCC BAA-316, CIP 106860, CIP 107849 [[Shewanella pacifica]], DSM 15445 [[Shewanella pacifica]], JCM 21433, KCTC 22435, KMM 3299, KMM 3597 [[Shewanella pacifica]], LMG 19691, LMG:19691, NBRC 103171, S. japonica, Shewanella japonica Ivanova et al. 2001 emend. Thorell et al. 2019, Shewanella pacifica, Shewanella pacifica Ivanova et al. 2004, Shewanella sp. KMM3299, strain R10SW1 [[Shewanella pacifica]]
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.