STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ARD22419.1Pfam:pfam02224 Cytidylate kinase. (225 aa)    
Predicted Functional Partners:
ARD23305.1
GTPase Der; Pfam:pfam01926 50S ribosome-binding GTPase.
  
 0.992
ARD22418.1
30S ribosomal protein S1; Pfam:pfam00575 S1 RNA binding domain.
  
 0.968
ARD22420.1
Pfam:pfam00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase).
 
  
 0.959
ARD22866.1
Pfam:pfam00334 Nucleoside diphosphate kinase.
  
 
 0.933
ARD22428.1
Ribonucleoside-diphosphate reductase class Ia beta subunit; Pfam:pfam00268 Ribonucleotide reductase, small chain.
    
 0.930
ARD23371.1
Pfam:pfam01975 Survival protein SurE.
    
 0.928
ARD22093.1
Uridine kinase; Pfam:pfam00485 Phosphoribulokinase / Uridine kinase family.
   
 
 0.927
ARD22427.1
Pfam:pfam02867 Ribonucleotide reductase, barrel domain.
  
 
 0.924
ARD23378.1
Nucleoside triphosphate pyrophosphohydrolase; Pfam:pfam03819 MazG nucleotide pyrophosphohydrolase domain.
 
  
  0.914
ARD23782.1
Pantothenate synthetase; Pfam:pfam02569 Pantoate-beta-alanine ligase.
      0.911
Your Current Organism:
Shewanella japonica
NCBI taxonomy Id: 93973
Other names: ATCC BAA-316, CIP 106860, CIP 107849 [[Shewanella pacifica]], DSM 15445 [[Shewanella pacifica]], JCM 21433, KCTC 22435, KMM 3299, KMM 3597 [[Shewanella pacifica]], LMG 19691, LMG:19691, NBRC 103171, S. japonica, Shewanella japonica Ivanova et al. 2001 emend. Thorell et al. 2019, Shewanella pacifica, Shewanella pacifica Ivanova et al. 2004, Shewanella sp. KMM3299, strain R10SW1 [[Shewanella pacifica]]
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