STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ARD22440.1Pfam:pfam07023 Protein of unknown function (DUF1315). (93 aa)    
Predicted Functional Partners:
ARD22441.1
Hypothetical protein.
 
   
 0.935
ARD22054.1
Pfam:pfam01625 Peptide methionine sulfoxide reductase.
  
    0.899
ARD22442.1
Pfam:pfam00246 Zinc carboxypeptidase.
     
 0.871
ARD22923.1
Pfam:pfam04217 Protein of unknown function, DUF412.
  
     0.762
ARD21001.1
Pfam:pfam06877 Regulator of ribonuclease activity B.
  
     0.754
ARD23784.1
DNA-binding protein; Pfam:pfam09526 Probable metal-binding protein (DUF2387).
  
     0.751
ARD22105.1
RNA chaperone ProQ; Pfam:pfam04352 ProQ/FINO family.
 
     0.750
ARD21956.1
Pfam:pfam07208 Protein of unknown function (DUF1414).
  
     0.745
ARD21555.1
Anti-sigma factor; Pfam:pfam03872 Anti sigma-E protein RseA, N-terminal domain.
  
     0.743
ARD21707.1
Pfam:pfam07348 Syd protein (SUKH-2).
  
     0.739
Your Current Organism:
Shewanella japonica
NCBI taxonomy Id: 93973
Other names: ATCC BAA-316, CIP 106860, CIP 107849 [[Shewanella pacifica]], DSM 15445 [[Shewanella pacifica]], JCM 21433, KCTC 22435, KMM 3299, KMM 3597 [[Shewanella pacifica]], LMG 19691, LMG:19691, NBRC 103171, S. japonica, Shewanella japonica Ivanova et al. 2001 emend. Thorell et al. 2019, Shewanella pacifica, Shewanella pacifica Ivanova et al. 2004, Shewanella sp. KMM3299, strain R10SW1 [[Shewanella pacifica]]
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.