STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ARD22650.1Peptidase S16; Pfam:pfam02190 ATP-dependent protease La (LON) domain. (182 aa)    
Predicted Functional Partners:
ARD22651.1
RNA polymerase subunit sigma; Pfam:pfam04542 Sigma-70 region 2.
 
   
 0.735
ARD22652.1
Hypothetical protein; Pfam:pfam12973 ChrR Cupin-like domain.
 
   
 0.699
ARD22649.1
Lipocalin; Pfam:pfam08212 Lipocalin-like domain.
       0.523
ARD22462.1
Asparagine--tRNA ligase; Pfam:pfam00152 tRNA synthetases class II (D, K and N).
  
 
  0.518
ARD24254.1
Pfam:pfam01203 Type II secretion system (T2SS), protein N.
  
     0.516
ARD21491.1
Pfam:pfam08349 Protein of unknown function (DUF1722).
     
 0.465
ARD21866.1
Pfam:pfam00136 DNA polymerase family B.
     
 0.463
ARD24255.1
Pfam:pfam04612 Type II secretion system (T2SS), protein M.
  
     0.452
ARD21499.1
Cyclopropane-fatty-acyl-phospholipid synthase; Pfam:pfam02353 Mycolic acid cyclopropane synthetase.
     
 0.450
ARD22543.1
Pfam:pfam09839 Uncharacterized protein conserved in bacteria (DUF2066).
  
     0.450
Your Current Organism:
Shewanella japonica
NCBI taxonomy Id: 93973
Other names: ATCC BAA-316, CIP 106860, CIP 107849 [[Shewanella pacifica]], DSM 15445 [[Shewanella pacifica]], JCM 21433, KCTC 22435, KMM 3299, KMM 3597 [[Shewanella pacifica]], LMG 19691, LMG:19691, NBRC 103171, S. japonica, Shewanella japonica Ivanova et al. 2001 emend. Thorell et al. 2019, Shewanella pacifica, Shewanella pacifica Ivanova et al. 2004, Shewanella sp. KMM3299, strain R10SW1 [[Shewanella pacifica]]
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.