STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ARD22662.1Pfam:pfam14696 Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal. (346 aa)    
Predicted Functional Partners:
ARD22661.1
Pfam:pfam04209 homogentisate 1,2-dioxygenase.
 
 0.999
ARD22343.1
Pfam:pfam00155 Aminotransferase class I and II.
  
 
 0.965
ARD22421.1
Pfam:pfam00155 Aminotransferase class I and II.
  
 
 0.964
ARD21787.1
Phenylalanine 4-hydroxylase; Pfam:pfam00351 Biopterin-dependent aromatic amino acid hydroxylase.
 
  
 0.940
ARD22570.1
Pfam:pfam00155 Aminotransferase class I and II.
    
 0.928
ARD21788.1
Putative pterin-4-alpha-carbinolamine dehydratase; Pfam:pfam01329 Pterin 4 alpha carbinolamine dehydratase.
  
  
 0.891
ARD21791.1
Maleylacetoacetate isomerase; Pfam:pfam13417 Glutathione S-transferase, N-terminal domain.
 
  
 0.890
ARD23113.1
3-methylcrotonyl-CoA carboxylase beta subunit; Pfam:pfam01039 Carboxyl transferase domain.
 
  
 0.883
ARD21790.1
Pfam:pfam01557 Fumarylacetoacetate (FAA) hydrolase family.
 
  
 0.882
ARD21056.1
Pfam:pfam02786 Carbamoyl-phosphate synthase L chain, ATP binding domain.
  
  
 0.825
Your Current Organism:
Shewanella japonica
NCBI taxonomy Id: 93973
Other names: ATCC BAA-316, CIP 106860, CIP 107849 [[Shewanella pacifica]], DSM 15445 [[Shewanella pacifica]], JCM 21433, KCTC 22435, KMM 3299, KMM 3597 [[Shewanella pacifica]], LMG 19691, LMG:19691, NBRC 103171, S. japonica, Shewanella japonica Ivanova et al. 2001 emend. Thorell et al. 2019, Shewanella pacifica, Shewanella pacifica Ivanova et al. 2004, Shewanella sp. KMM3299, strain R10SW1 [[Shewanella pacifica]]
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