STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ARD22664.1Endonuclease/exonuclease/phosphatase; Pfam:pfam00932 Lamin Tail Domain. (972 aa)    
Predicted Functional Partners:
ARD22641.1
Pfam:pfam02872 5'-nucleotidase, C-terminal domain.
   
 0.876
ARD22625.1
Alkaline phosphatase.
   
 0.847
ARD21052.1
Pfam:pfam04231 Endonuclease I.
     
 0.627
ARD22549.1
Pfam:pfam04293 SpoVR like protein.
   
    0.504
ARD21021.1
Peptidase S8; Pfam:pfam00082 Subtilase family.
  
    0.501
ARD22663.1
Pfam:pfam00849 RNA pseudouridylate synthase.
       0.476
ARD22639.1
Pfam:pfam02872 5'-nucleotidase, C-terminal domain.
   
 0.471
ARD23269.1
succinyl-CoA synthetase subunit alpha.
 
     0.468
ARD23728.1
dTDP-glucose 4,6-dehydratase; Pfam:pfam05787 Bacterial protein of unknown function (DUF839).
     
 0.446
ARD22713.1
2',3'-cyclic-nucleotide 2'-phosphodiesterase; Pfam:pfam02872 5'-nucleotidase, C-terminal domain.
 
   
 0.411
Your Current Organism:
Shewanella japonica
NCBI taxonomy Id: 93973
Other names: ATCC BAA-316, CIP 106860, CIP 107849 [[Shewanella pacifica]], DSM 15445 [[Shewanella pacifica]], JCM 21433, KCTC 22435, KMM 3299, KMM 3597 [[Shewanella pacifica]], LMG 19691, LMG:19691, NBRC 103171, S. japonica, Shewanella japonica Ivanova et al. 2001 emend. Thorell et al. 2019, Shewanella pacifica, Shewanella pacifica Ivanova et al. 2004, Shewanella sp. KMM3299, strain R10SW1 [[Shewanella pacifica]]
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.