STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ARD22889.1RNA helicase; Pfam:pfam00270 DEAD/DEAH box helicase. (461 aa)    
Predicted Functional Partners:
ARD23824.1
Putative ribosome biogenesis GTPase RsgA; Pfam:pfam03193 Protein of unknown function, DUF258.
   
    0.854
ARD23426.1
Polyribonucleotide nucleotidyltransferase; Pfam:pfam01138 3' exoribonuclease family, domain 1.
  
 0.850
ARD22052.1
Pfam:pfam01926 50S ribosome-binding GTPase.
  
 0.822
ARD24225.1
Pfam:pfam00573 Ribosomal protein L4/L1 family.
   
 0.785
ARD24405.1
F0F1 ATP synthase subunit gamma; Pfam:pfam00231 ATP synthase.
    
 0.782
ARD24404.1
Pfam:pfam00006 ATP synthase alpha/beta family, nucleotide-binding domain.
    
 0.776
ARD24226.1
Pfam:pfam00297 Ribosomal protein L3.
   
 0.772
ARD24235.1
Pfam:pfam00466 Ribosomal protein L10.
   
 0.764
ARD24406.1
Pfam:pfam00006 ATP synthase alpha/beta family, nucleotide-binding domain.
    
 0.758
ARD24208.1
Pfam:pfam00327 Ribosomal protein L30p/L7e.
   
 0.749
Your Current Organism:
Shewanella japonica
NCBI taxonomy Id: 93973
Other names: ATCC BAA-316, CIP 106860, CIP 107849 [[Shewanella pacifica]], DSM 15445 [[Shewanella pacifica]], JCM 21433, KCTC 22435, KMM 3299, KMM 3597 [[Shewanella pacifica]], LMG 19691, LMG:19691, NBRC 103171, S. japonica, Shewanella japonica Ivanova et al. 2001 emend. Thorell et al. 2019, Shewanella pacifica, Shewanella pacifica Ivanova et al. 2004, Shewanella sp. KMM3299, strain R10SW1 [[Shewanella pacifica]]
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.