STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ARD22902.1Pfam:pfam13275 S4 domain. (77 aa)    
Predicted Functional Partners:
ARD20356.1
DNA replication and repair protein RecF; Pfam:pfam02463 RecF/RecN/SMC N terminal domain.
  
  
 0.843
ARD22901.1
Hypothetical protein; Pfam:pfam06877 Regulator of ribonuclease activity B.
       0.774
ARD20355.1
Pfam:pfam02768 DNA polymerase III beta subunit, C-terminal domain.
  
  
 0.572
ARD21841.1
Ribosomal RNA large subunit methyltransferase; Pfam:pfam01170 Putative RNA methylase family UPF0020.
   
   0.526
ARD22903.1
NAD-dependent dehydratase; Pfam:pfam13460 NADH(P)-binding.
       0.506
ARD20354.1
Chromosomal replication initiator protein DnaA; Pfam:pfam00308 Bacterial dnaA protein.
  
    0.444
ARD22542.1
DnaA regulatory inactivator Hda; Pfam:pfam00308 Bacterial dnaA protein.
  
    0.444
ARD22900.1
Serine/threonine protein kinase; Pfam:pfam08378 Nuclease-related domain.
       0.425
Your Current Organism:
Shewanella japonica
NCBI taxonomy Id: 93973
Other names: ATCC BAA-316, CIP 106860, CIP 107849 [[Shewanella pacifica]], DSM 15445 [[Shewanella pacifica]], JCM 21433, KCTC 22435, KMM 3299, KMM 3597 [[Shewanella pacifica]], LMG 19691, LMG:19691, NBRC 103171, S. japonica, Shewanella japonica Ivanova et al. 2001 emend. Thorell et al. 2019, Shewanella pacifica, Shewanella pacifica Ivanova et al. 2004, Shewanella sp. KMM3299, strain R10SW1 [[Shewanella pacifica]]
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.