STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ARD22997.1threonylcarbamoyl-AMP synthase; Pfam:pfam01300 Telomere recombination. (206 aa)    
Predicted Functional Partners:
ARD20823.1
Pfam:pfam00270 DEAD/DEAH box helicase.
   
    0.963
ARD22998.1
3',5'-nucleoside bisphosphate phosphatase; Pfam:pfam02811 PHP domain.
 
    0.871
ARD20691.1
DNA-directed RNA polymerase subunit omega; Pfam:pfam01192 RNA polymerase Rpb6.
  
    0.647
ARD23995.1
Transcription termination factor Rho; Pfam:pfam00006 ATP synthase alpha/beta family, nucleotide-binding domain.
  
    0.522
ARD22894.1
Pfam:pfam13558 Putative exonuclease SbcCD, C subunit.
   
   0.507
ARD21632.1
tRNA (guanine-N(7)-)-methyltransferase; Pfam:pfam02390 Putative methyltransferase.
 
  
 0.501
ARD22994.1
Pfam:pfam00849 RNA pseudouridylate synthase.
  
  
 0.489
ARD22996.1
Condensin subunit ScpA; Pfam:pfam02616 ScpA/B protein.
       0.487
ARD22165.1
Aspartate--tRNA ligase; Pfam:pfam00152 tRNA synthetases class II (D, K and N).
 
     0.448
ARD22995.1
Condensin subunit ScpB; Pfam:pfam04079 Putative transcriptional regulators (Ypuh-like).
  
    0.446
Your Current Organism:
Shewanella japonica
NCBI taxonomy Id: 93973
Other names: ATCC BAA-316, CIP 106860, CIP 107849 [[Shewanella pacifica]], DSM 15445 [[Shewanella pacifica]], JCM 21433, KCTC 22435, KMM 3299, KMM 3597 [[Shewanella pacifica]], LMG 19691, LMG:19691, NBRC 103171, S. japonica, Shewanella japonica Ivanova et al. 2001 emend. Thorell et al. 2019, Shewanella pacifica, Shewanella pacifica Ivanova et al. 2004, Shewanella sp. KMM3299, strain R10SW1 [[Shewanella pacifica]]
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