STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ARD23112.1Pfam:pfam02771 Acyl-CoA dehydrogenase, N-terminal domain. (389 aa)    
Predicted Functional Partners:
ARD23113.1
3-methylcrotonyl-CoA carboxylase beta subunit; Pfam:pfam01039 Carboxyl transferase domain.
 
 
 0.995
ARD20366.1
Fatty acid oxidation complex subunit alpha; Pfam:pfam02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain.
 0.993
ARD23055.1
Fatty acid oxidation complex subunit alpha; Pfam:pfam02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain.
 
 0.992
ARD23135.1
Pfam:pfam00766 Electron transfer flavoprotein FAD-binding domain.
 
 0.968
ARD23114.1
Pfam:pfam00378 Enoyl-CoA hydratase/isomerase family.
 
 0.964
ARD23115.1
3-methylcrotonyl-CoA carboxylase alpha subunit; Pfam:pfam02786 Carbamoyl-phosphate synthase L chain, ATP binding domain.
 
 0.963
ARD23136.1
Pfam:pfam01012 Electron transfer flavoprotein domain.
 
 
 0.936
ARD22336.1
Dihydrolipoamide acetyltransferase; Pfam:pfam00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain).
   
 0.908
ARD21803.1
Pfam:pfam00378 Enoyl-CoA hydratase/isomerase family.
 
 0.844
ARD21804.1
Pfam:pfam13766 2-enoyl-CoA Hydratase C-terminal region.
 
 0.783
Your Current Organism:
Shewanella japonica
NCBI taxonomy Id: 93973
Other names: ATCC BAA-316, CIP 106860, CIP 107849 [[Shewanella pacifica]], DSM 15445 [[Shewanella pacifica]], JCM 21433, KCTC 22435, KMM 3299, KMM 3597 [[Shewanella pacifica]], LMG 19691, LMG:19691, NBRC 103171, S. japonica, Shewanella japonica Ivanova et al. 2001 emend. Thorell et al. 2019, Shewanella pacifica, Shewanella pacifica Ivanova et al. 2004, Shewanella sp. KMM3299, strain R10SW1 [[Shewanella pacifica]]
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