STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ARD23199.1RNA polymerase sigma factor FliA; Pfam:pfam04542 Sigma-70 region 2. (239 aa)    
Predicted Functional Partners:
ARD23241.1
Pfam:pfam04316 Anti-sigma-28 factor, FlgM.
 
 0.996
ARD20638.1
Hypothetical protein; Pfam:pfam04316 Anti-sigma-28 factor, FlgM.
  
 0.992
ARD23209.1
Pfam:pfam02154 Flagellar motor switch protein FliM.
 
 
 0.967
ARD23197.1
Pfam:pfam04344 Chemotaxis phosphatase, CheZ.
 
  
 0.960
ARD23200.1
Cobyrinic acid a,c-diamide synthase; Pfam:pfam01656 CobQ/CobB/MinD/ParA nucleotide binding domain.
 
  
 0.960
ARD23202.1
Flagellar biosynthesis protein FlhA; Pfam:pfam00771 FHIPEP family.
 
  
 0.953
ARD23236.1
Pfam:pfam06429 Flagellar basal body rod FlgEFG protein C-terminal.
 
 
 0.951
ARD23201.1
Flagellar biosynthesis protein FlhF; Pfam:pfam00448 SRP54-type protein, GTPase domain.
 
  
 0.950
ARD23237.1
Flagellar basal body rod protein FlgB.
 
 
 0.944
ARD23216.1
Pfam:pfam08345 Flagellar M-ring protein C-terminal.
 
  
 0.939
Your Current Organism:
Shewanella japonica
NCBI taxonomy Id: 93973
Other names: ATCC BAA-316, CIP 106860, CIP 107849 [[Shewanella pacifica]], DSM 15445 [[Shewanella pacifica]], JCM 21433, KCTC 22435, KMM 3299, KMM 3597 [[Shewanella pacifica]], LMG 19691, LMG:19691, NBRC 103171, S. japonica, Shewanella japonica Ivanova et al. 2001 emend. Thorell et al. 2019, Shewanella pacifica, Shewanella pacifica Ivanova et al. 2004, Shewanella sp. KMM3299, strain R10SW1 [[Shewanella pacifica]]
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.