STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ARD23240.1Flagella basal body P-ring formation protein FlgA; Pfam:pfam13144 SAF-like. (240 aa)    
Predicted Functional Partners:
ARD23229.1
Flagellar rod assembly protein/muramidase FlgJ; Pfam:pfam01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase.
 
  
 0.988
ARD23241.1
Pfam:pfam04316 Anti-sigma-28 factor, FlgM.
 
  
 0.968
ARD23210.1
Pfam:pfam03748 Flagellar basal body-associated protein FliL.
 
  
 0.956
ARD23209.1
Pfam:pfam02154 Flagellar motor switch protein FliM.
 
  
 0.953
ARD23235.1
Flagellar basal-body rod modification protein FlgD; Pfam:pfam13861 FlgD Tudor-like domain.
 
  
 0.951
ARD24308.1
Pfam:pfam03748 Flagellar basal body-associated protein FliL.
 
  
 0.943
ARD23231.1
Pfam:pfam02107 Flagellar L-ring protein.
 
  
 0.942
ARD23237.1
Flagellar basal body rod protein FlgB.
 
  
 0.941
ARD20636.1
Flagellar basal body rod protein FlgB.
 
  
 0.938
ARD23230.1
Pfam:pfam02119 Flagellar P-ring protein.
 
  
 0.936
Your Current Organism:
Shewanella japonica
NCBI taxonomy Id: 93973
Other names: ATCC BAA-316, CIP 106860, CIP 107849 [[Shewanella pacifica]], DSM 15445 [[Shewanella pacifica]], JCM 21433, KCTC 22435, KMM 3299, KMM 3597 [[Shewanella pacifica]], LMG 19691, LMG:19691, NBRC 103171, S. japonica, Shewanella japonica Ivanova et al. 2001 emend. Thorell et al. 2019, Shewanella pacifica, Shewanella pacifica Ivanova et al. 2004, Shewanella sp. KMM3299, strain R10SW1 [[Shewanella pacifica]]
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.