STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ARD23306.1Outer membrane protein assembly factor BamB; Pfam:pfam13360 PQQ-like domain. (395 aa)    
Predicted Functional Partners:
ARD23307.1
Hypothetical protein; Pfam:pfam09976 Tetratricopeptide repeat.
 
    0.966
ARD21733.1
Outer membrane protein assembly factor BamA; Pfam:pfam01103 Surface antigen.
 
 0.960
ARD23605.1
Pfam:pfam13525 Outer membrane lipoprotein.
 
 0.952
ARD23328.1
Cell envelope protein SmpA; Pfam:pfam04355 SmpA / OmlA family.
  
 
 0.938
ARD22139.1
Outer membrane protein assembly factor BamC; Pfam:pfam06804 NlpB/DapX lipoprotein.
  
 0.933
ARD21437.1
Pfam:pfam09312 SurA N-terminal domain.
  
 
 0.893
ARD24086.1
Hypothetical protein.
  
 0.838
ARD23308.1
Histidine--tRNA ligase; Pfam:pfam00587 tRNA synthetase class II core domain (G, H, P, S and T).
  
    0.818
ARD20762.1
Patatin; Pfam:pfam01734 Patatin-like phospholipase.
  
 0.803
ARD23923.1
Patatin; Pfam:pfam01734 Patatin-like phospholipase.
  
 0.803
Your Current Organism:
Shewanella japonica
NCBI taxonomy Id: 93973
Other names: ATCC BAA-316, CIP 106860, CIP 107849 [[Shewanella pacifica]], DSM 15445 [[Shewanella pacifica]], JCM 21433, KCTC 22435, KMM 3299, KMM 3597 [[Shewanella pacifica]], LMG 19691, LMG:19691, NBRC 103171, S. japonica, Shewanella japonica Ivanova et al. 2001 emend. Thorell et al. 2019, Shewanella pacifica, Shewanella pacifica Ivanova et al. 2004, Shewanella sp. KMM3299, strain R10SW1 [[Shewanella pacifica]]
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.