STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ARD23452.1Pfam:pfam00860 Permease family. (429 aa)    
Predicted Functional Partners:
ARD23292.1
Phosphoribosylformylglycinamidine synthase; Pfam:pfam13507 CobB/CobQ-like glutamine amidotransferase domain.
  
  
 0.928
ARD23348.1
N5-carboxyaminoimidazole ribonucleotide mutase; Pfam:pfam00731 AIR carboxylase.
  
    0.672
ARD23349.1
N5-carboxyaminoimidazole ribonucleotide synthase; Pfam:pfam02222 ATP-grasp domain.
  
    0.670
ARD22544.1
Uracil transporter; Pfam:pfam00860 Permease family.
 
  
 0.651
ARD23959.1
Phosphoribosylamine--glycine ligase; Pfam:pfam01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain.
  
  
 0.630
ARD21971.1
Phosphoribosylformylglycinamidine cyclo-ligase; Pfam:pfam02769 AIR synthase related protein, C-terminal domain.
  
  
 0.627
ARD20820.1
Phosphoribosylaminoimidazole-succinocarboxamide synthase; Pfam:pfam01259 SAICAR synthetase.
  
  
 0.624
ARD21970.1
Phosphoribosylglycinamide formyltransferase; Pfam:pfam00551 Formyl transferase.
  
  
 0.559
ARD23958.1
Bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Pfam:pfam01808 AICARFT/IMPCHase bienzyme.
  
  
 0.556
ARD22856.1
Adenine phosphoribosyltransferase; Pfam:pfam00156 Phosphoribosyl transferase domain.
 
  
 0.510
Your Current Organism:
Shewanella japonica
NCBI taxonomy Id: 93973
Other names: ATCC BAA-316, CIP 106860, CIP 107849 [[Shewanella pacifica]], DSM 15445 [[Shewanella pacifica]], JCM 21433, KCTC 22435, KMM 3299, KMM 3597 [[Shewanella pacifica]], LMG 19691, LMG:19691, NBRC 103171, S. japonica, Shewanella japonica Ivanova et al. 2001 emend. Thorell et al. 2019, Shewanella pacifica, Shewanella pacifica Ivanova et al. 2004, Shewanella sp. KMM3299, strain R10SW1 [[Shewanella pacifica]]
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