STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ARD23467.1S-ribosylhomocysteine lyase; Pfam:pfam02664 S-Ribosylhomocysteinase (LuxS). (169 aa)    
Predicted Functional Partners:
ARD21537.1
5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase; Pfam:pfam01048 Phosphorylase superfamily.
 
 
 0.986
ARD23521.1
Pfam:pfam02574 Homocysteine S-methyltransferase.
    
 0.948
ARD22040.1
Cystathionine beta-lyase; Pfam:pfam01053 Cys/Met metabolizm PLP-dependent enzyme.
 
 
 0.943
ARD20972.1
O-succinylhomoserine (Thiol)-lyase; Pfam:pfam01053 Cys/Met metabolizm PLP-dependent enzyme.
 
 
 0.938
ARD20861.1
5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; Pfam:pfam01717 Cobalamin-independent synthase, Catalytic domain.
    
 0.937
ARD21124.1
O-acetylhomoserine/O-acetylserine sulfhydrylase; Pfam:pfam01053 Cys/Met metabolizm PLP-dependent enzyme.
     
 0.909
ARD22926.1
Cystathionine beta-lyase; Pfam:pfam00155 Aminotransferase class I and II.
     
  0.900
ARD22256.1
Cysteine synthase; Pfam:pfam00291 Pyridoxal-phosphate dependent enzyme.
  
 
 0.871
ARD22913.1
Cysteine synthase A; Pfam:pfam00291 Pyridoxal-phosphate dependent enzyme.
  
 
 0.871
ARD20973.1
Bifunctional aspartate kinase/homoserine dehydrogenase II; Pfam:pfam00742 Homoserine dehydrogenase.
     
 0.859
Your Current Organism:
Shewanella japonica
NCBI taxonomy Id: 93973
Other names: ATCC BAA-316, CIP 106860, CIP 107849 [[Shewanella pacifica]], DSM 15445 [[Shewanella pacifica]], JCM 21433, KCTC 22435, KMM 3299, KMM 3597 [[Shewanella pacifica]], LMG 19691, LMG:19691, NBRC 103171, S. japonica, Shewanella japonica Ivanova et al. 2001 emend. Thorell et al. 2019, Shewanella pacifica, Shewanella pacifica Ivanova et al. 2004, Shewanella sp. KMM3299, strain R10SW1 [[Shewanella pacifica]]
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