STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ARD23481.1Pfam:pfam05114 Protein of unknown function (DUF692). (314 aa)    
Predicted Functional Partners:
ARD23482.1
DUF2063 domain-containing protein; Pfam:pfam09836 Uncharacterized protein conserved in bacteria (DUF2063).
 
  
 0.990
ARD22858.1
Pfam:pfam09836 Uncharacterized protein conserved in bacteria (DUF2063).
 
  
 0.897
ARD22028.1
Membrane protein; Pfam:pfam07681 DoxX.
 
  
 0.746
ARD23480.1
Hypothetical protein.
 
     0.654
ARD24080.1
Hypothetical protein; Pfam:pfam03534 Salmonella virulence plasmid 65kDa B protein.
  
    0.562
ARD22731.1
Hypothetical protein.
   
    0.487
ARD21953.1
Sulfoxide reductase heme-binding subunit YedZ; Pfam:pfam01794 Ferric reductase like transmembrane component.
   
  
 0.431
ARD21755.1
Hypothetical protein; Pfam:pfam01740 STAS domain.
   
    0.416
ARD21278.1
Cyclic nucleotide-binding domain-containing protein; Pfam:pfam08787 Alginate lyase.
   
    0.412
ARD23848.1
Hypothetical protein.
   
    0.412
Your Current Organism:
Shewanella japonica
NCBI taxonomy Id: 93973
Other names: ATCC BAA-316, CIP 106860, CIP 107849 [[Shewanella pacifica]], DSM 15445 [[Shewanella pacifica]], JCM 21433, KCTC 22435, KMM 3299, KMM 3597 [[Shewanella pacifica]], LMG 19691, LMG:19691, NBRC 103171, S. japonica, Shewanella japonica Ivanova et al. 2001 emend. Thorell et al. 2019, Shewanella pacifica, Shewanella pacifica Ivanova et al. 2004, Shewanella sp. KMM3299, strain R10SW1 [[Shewanella pacifica]]
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.