STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ARD23757.1lysine--tRNA ligase; Pfam:pfam00152 tRNA synthetases class II (D, K and N). (500 aa)    
Predicted Functional Partners:
ARD21599.1
Isoleucine--tRNA ligase; Pfam:pfam00133 tRNA synthetases class I (I, L, M and V).
 
 0.991
ARD22091.1
Methionine--tRNA ligase; Pfam:pfam09334 tRNA synthetases class I (M).
 
 0.981
ARD20771.1
Arginine--tRNA ligase; Pfam:pfam00750 tRNA synthetases class I (R).
  
 0.978
ARD23758.1
Peptide chain release factor 2; Pfam:pfam00472 RF-1 domain.
  
 
 0.972
ARD23141.1
Proline--tRNA ligase; Pfam:pfam00587 tRNA synthetase class II core domain (G, H, P, S and T).
  
 0.968
ARD23778.1
Glutamyl-Q tRNA(Asp) synthetase; Pfam:pfam00749 tRNA synthetases class I (E and Q), catalytic domain.
 
 0.964
ARD21881.1
Glutamine--tRNA ligase; Pfam:pfam00749 tRNA synthetases class I (E and Q), catalytic domain.
  
 0.959
ARD23094.1
Pfam:pfam00749 tRNA synthetases class I (E and Q), catalytic domain.
  
 0.958
ARD21341.1
Leucine--tRNA ligase; Pfam:pfam13603 Leucyl-tRNA synthetase, Domain 2.
  
 0.954
ARD23295.1
Pfam:pfam00958 GMP synthase C terminal domain.
  
  
 0.944
Your Current Organism:
Shewanella japonica
NCBI taxonomy Id: 93973
Other names: ATCC BAA-316, CIP 106860, CIP 107849 [[Shewanella pacifica]], DSM 15445 [[Shewanella pacifica]], JCM 21433, KCTC 22435, KMM 3299, KMM 3597 [[Shewanella pacifica]], LMG 19691, LMG:19691, NBRC 103171, S. japonica, Shewanella japonica Ivanova et al. 2001 emend. Thorell et al. 2019, Shewanella pacifica, Shewanella pacifica Ivanova et al. 2004, Shewanella sp. KMM3299, strain R10SW1 [[Shewanella pacifica]]
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.