STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ARD23813.1Ubiquinol-cytochrome c reductase iron-sulfur subunit; Pfam:pfam00355 Rieske [2Fe-2S] domain. (196 aa)    
Predicted Functional Partners:
ARD20544.1
Pfam:pfam00116 Cytochrome C oxidase subunit II, periplasmic domain.
 
 0.999
ARD23811.1
Ubiquinol-cytochrome c reductase cytochrome c1 subunit PetC; Pfam:pfam02167 Cytochrome C1 family.
 
 0.999
ARD23812.1
Cytochrome b; Pfam:pfam13631 Cytochrome b(N-terminal)/b6/petB.
 
 0.999
ARD20541.1
Pfam:pfam00510 Cytochrome c oxidase subunit III.
 
 0.995
ARD20543.1
Pfam:pfam00115 Cytochrome C and Quinol oxidase polypeptide I.
  
 0.988
ARD22354.1
Pfam:pfam14715 N-terminal domain of cytochrome oxidase-cbb3, FixP.
 
 
 0.974
ARD23705.1
Hypothetical protein.
  
 
 0.971
ARD24303.1
Pfam:pfam12838 4Fe-4S dicluster domain.
  
 
 0.970
ARD23404.1
Ferredoxin.
  
 
 0.969
ARD21919.1
Hypothetical protein.
  
 
 0.962
Your Current Organism:
Shewanella japonica
NCBI taxonomy Id: 93973
Other names: ATCC BAA-316, CIP 106860, CIP 107849 [[Shewanella pacifica]], DSM 15445 [[Shewanella pacifica]], JCM 21433, KCTC 22435, KMM 3299, KMM 3597 [[Shewanella pacifica]], LMG 19691, LMG:19691, NBRC 103171, S. japonica, Shewanella japonica Ivanova et al. 2001 emend. Thorell et al. 2019, Shewanella pacifica, Shewanella pacifica Ivanova et al. 2004, Shewanella sp. KMM3299, strain R10SW1 [[Shewanella pacifica]]
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.