STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ARD23829.1Pfam:pfam11872 Protein of unknown function (DUF3392). (110 aa)    
Predicted Functional Partners:
ARD23830.1
Dihydrofolate reductase; Pfam:pfam02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain.
 
   
 0.740
ARD21431.1
Pfam:pfam12514 Protein of unknown function (DUF3718).
  
     0.598
ARD21860.1
Competence protein ComFB; Pfam:pfam10719 Late competence development protein ComFB.
  
     0.574
ARD22411.1
Hypothetical protein.
  
     0.565
ARD23791.1
Hypothetical protein.
  
     0.535
ARD22796.1
Pfam:pfam10972 Protein of unknown function (DUF2803).
  
     0.534
ARD21034.1
Pfam:pfam12128 Protein of unknown function (DUF3584).
 
     0.507
ARD20529.1
Pfam:pfam01522 Polysaccharide deacetylase.
  
     0.498
ARD21844.1
Pfam:pfam11949 Protein of unknown function (DUF3466).
  
     0.479
ARD21714.1
Pfam:pfam11743 Protein of unknown function (DUF3301).
  
     0.471
Your Current Organism:
Shewanella japonica
NCBI taxonomy Id: 93973
Other names: ATCC BAA-316, CIP 106860, CIP 107849 [[Shewanella pacifica]], DSM 15445 [[Shewanella pacifica]], JCM 21433, KCTC 22435, KMM 3299, KMM 3597 [[Shewanella pacifica]], LMG 19691, LMG:19691, NBRC 103171, S. japonica, Shewanella japonica Ivanova et al. 2001 emend. Thorell et al. 2019, Shewanella pacifica, Shewanella pacifica Ivanova et al. 2004, Shewanella sp. KMM3299, strain R10SW1 [[Shewanella pacifica]]
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.