STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ARD24189.1Damage-inducible protein CinA; Pfam:pfam02464 Competence-damaged protein. (424 aa)    
Predicted Functional Partners:
ARD21338.1
Nicotinate-nucleotide adenylyltransferase; Pfam:pfam01467 Cytidylyltransferase.
 
 
 0.974
ARD20754.1
Nicotinate-nucleotide pyrophosphorylase; Pfam:pfam01729 Quinolinate phosphoribosyl transferase, C-terminal domain.
    
 0.947
ARD22952.1
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; Pfam:pfam01066 CDP-alcohol phosphatidyltransferase.
  
  
 0.937
ARD23378.1
Nucleoside triphosphate pyrophosphohydrolase; Pfam:pfam03819 MazG nucleotide pyrophosphohydrolase domain.
  
  
  0.919
ARD20695.1
5'-nucleotidase; Pfam:pfam13419 Haloacid dehalogenase-like hydrolase.
    
  0.913
ARD23371.1
Pfam:pfam01975 Survival protein SurE.
    
  0.913
ARD24253.1
HAD family hydrolase; Pfam:pfam13419 Haloacid dehalogenase-like hydrolase.
    
  0.913
ARD22639.1
Pfam:pfam02872 5'-nucleotidase, C-terminal domain.
   
 
  0.911
ARD22641.1
Pfam:pfam02872 5'-nucleotidase, C-terminal domain.
   
 
  0.911
ARD23314.1
Bifunctional metallophosphatase/5'-nucleotidase; Pfam:pfam02872 5'-nucleotidase, C-terminal domain.
   
 
  0.911
Your Current Organism:
Shewanella japonica
NCBI taxonomy Id: 93973
Other names: ATCC BAA-316, CIP 106860, CIP 107849 [[Shewanella pacifica]], DSM 15445 [[Shewanella pacifica]], JCM 21433, KCTC 22435, KMM 3299, KMM 3597 [[Shewanella pacifica]], LMG 19691, LMG:19691, NBRC 103171, S. japonica, Shewanella japonica Ivanova et al. 2001 emend. Thorell et al. 2019, Shewanella pacifica, Shewanella pacifica Ivanova et al. 2004, Shewanella sp. KMM3299, strain R10SW1 [[Shewanella pacifica]]
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