STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ARD24407.1Pfam:pfam00213 ATP synthase delta (OSCP) subunit. (177 aa)    
Predicted Functional Partners:
ARD24403.1
Pfam:pfam02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain.
 
 0.999
ARD24404.1
Pfam:pfam00006 ATP synthase alpha/beta family, nucleotide-binding domain.
 
 0.999
ARD24405.1
F0F1 ATP synthase subunit gamma; Pfam:pfam00231 ATP synthase.
 
 0.999
ARD24406.1
Pfam:pfam00006 ATP synthase alpha/beta family, nucleotide-binding domain.
 
 0.999
ARD24408.1
Pfam:pfam00430 ATP synthase B/B' CF(0).
 
 0.999
ARD24409.1
Pfam:pfam00137 ATP synthase subunit C.
  
 0.999
ARD24410.1
Pfam:pfam00119 ATP synthase A chain.
 
 0.999
ARD24411.1
Pfam:pfam03899 ATP synthase I chain.
  
 
 0.968
ARD23811.1
Ubiquinol-cytochrome c reductase cytochrome c1 subunit PetC; Pfam:pfam02167 Cytochrome C1 family.
   
 
 0.967
ARD24225.1
Pfam:pfam00573 Ribosomal protein L4/L1 family.
 
  
 0.929
Your Current Organism:
Shewanella japonica
NCBI taxonomy Id: 93973
Other names: ATCC BAA-316, CIP 106860, CIP 107849 [[Shewanella pacifica]], DSM 15445 [[Shewanella pacifica]], JCM 21433, KCTC 22435, KMM 3299, KMM 3597 [[Shewanella pacifica]], LMG 19691, LMG:19691, NBRC 103171, S. japonica, Shewanella japonica Ivanova et al. 2001 emend. Thorell et al. 2019, Shewanella pacifica, Shewanella pacifica Ivanova et al. 2004, Shewanella sp. KMM3299, strain R10SW1 [[Shewanella pacifica]]
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.