STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000402655_00488Unannotated protein. (1239 aa)    
Predicted Functional Partners:
GCA_000402655_00491
Unannotated protein.
 
     0.817
GCA_000402655_00490
Unannotated protein.
 
     0.811
GCA_000402655_00489
Unannotated protein.
       0.773
GCA_000402655_00998
Unannotated protein.
  
     0.676
GCA_000402655_00712
Unannotated protein.
  
     0.624
GCA_000402655_00485
Unannotated protein.
       0.620
GCA_000402655_00486
Unannotated protein.
       0.620
GCA_000402655_00487
Unannotated protein.
       0.620
GCA_000402655_00493
Unannotated protein.
 
     0.585
GCA_000402655_00492
Unannotated protein.
       0.516
Your Current Organism:
Marinimicrobia bacterium SCGC AAA298D23
NCBI taxonomy Id: 939857
Other names: M. bacterium SCGC AAA298-D23, Marinimicrobia bacterium SCGC AAA298-D23, SAR406 cluster bacterium SCGC AAA298-D23
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