STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
L5JUM1_PTEALProtein SMG5. (959 aa)    
Predicted Functional Partners:
UPF3A
Regulator of nonsense transcripts 3A.
   
 0.988
UPF1
Regulator of nonsense transcripts 1.
   
 0.984
SMG7
Protein SMG7.
   
0.979
UPF3B
Regulator of nonsense transcripts 3B.
   
 0.933
PABPC1
Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.
    
 0.926
SMG6
Telomerase-binding protein EST1A.
   
 0.878
L5JUF1_PTEAL
Telomerase-binding protein EST1A.
   
 0.878
SMG9
Protein SMG9.
   
 
 0.847
UPF2
Regulator of nonsense transcripts 2.
   
 0.805
SMG1
Serine/threonine-protein kinase SMG1; Belongs to the PI3/PI4-kinase family.
   
 0.804
Your Current Organism:
Pteropus alecto
NCBI taxonomy Id: 9402
Other names: P. alecto, black flying fox
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.