STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
L5JV35_PTEALDeubiquitinating protein VCIP135. (1157 aa)    
Predicted Functional Partners:
VCP
Transitional endoplasmic reticulum ATPase; Belongs to the AAA ATPase family.
   
 
 0.942
NSFL1C
NSFL1 cofactor p47.
   
 
 0.939
NPLOC4
Nuclear protein localization protein 4 like protein.
    
 
 0.928
UBXN2B
UBX domain-containing protein 2B.
   
 
 0.922
UBXN7
UBX domain-containing protein 7.
   
 
 0.915
L5KFQ1_PTEAL
Cell division control protein 2 like protein.
   
 
 0.866
L5JZ79_PTEAL
Ubiquitin fusion degradation protein 1 like protein.
    
 
 0.824
UFD1
Ubiquitin fusion degradation protein 1 like protein.
    
 
 0.824
USP40
Ubiquitin carboxyl-terminal hydrolase 40; Belongs to the peptidase C19 family.
    
 
 0.790
UBXN2A
UBX domain-containing protein 2A.
   
 
 0.789
Your Current Organism:
Pteropus alecto
NCBI taxonomy Id: 9402
Other names: P. alecto, black flying fox
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.