STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COL6A1Collagen alpha-1(VI) chain. (504 aa)    
Predicted Functional Partners:
COL6A2
Collagen alpha-2(VI) chain.
 
 
 0.999
COL1A1
Collagen alpha-1(I) chain.
  
0.988
COL1A2
Collagen alpha-2(I) chain.
  
0.968
L5JX12_PTEAL
Collagen alpha-2(VI) chain.
  
0.940
ITGA11
Integrin alpha-11; Belongs to the integrin alpha chain family.
   
 
 0.939
COL4A1
Collagen alpha-1(IV) chain.
  
0.934
COL4A5
Collagen alpha-1(IV) chain.
  
0.933
ITGA10
Integrin alpha-10.
   
 
 0.926
COL4A2
Collagen alpha-2(IV) chain.
   
 0.926
ITGAV
Integrin alpha-V; Belongs to the integrin alpha chain family.
    
 0.922
Your Current Organism:
Pteropus alecto
NCBI taxonomy Id: 9402
Other names: P. alecto, black flying fox
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.