Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
APEX2 | MBD4 | L5KX77 | L5K8S1 | DNA-(apurinic or apyrimidinic site) lyase; Initiates repair of AP sites in DNA by catalyzing hydrolytic incision of the phosphodiester backbone immediately adjacent to the damage, generating a single-strand break with 5'-deoxyribose phosphate and 3'-hydroxyl ends. | Methyl-CpG-binding domain protein 4. | 0.453 |
APEX2 | SMUG1 | L5KX77 | L5L7F0 | DNA-(apurinic or apyrimidinic site) lyase; Initiates repair of AP sites in DNA by catalyzing hydrolytic incision of the phosphodiester backbone immediately adjacent to the damage, generating a single-strand break with 5'-deoxyribose phosphate and 3'-hydroxyl ends. | Single-strand selective monofunctional uracil DNA glycosylase. | 0.542 |
APEX2 | TDG | L5KX77 | L5KHS4 | DNA-(apurinic or apyrimidinic site) lyase; Initiates repair of AP sites in DNA by catalyzing hydrolytic incision of the phosphodiester backbone immediately adjacent to the damage, generating a single-strand break with 5'-deoxyribose phosphate and 3'-hydroxyl ends. | G/T mismatch-specific thymine DNA glycosylase. | 0.786 |
APOBEC1 | TDG | L5KGJ8 | L5KHS4 | C->U-editing enzyme APOBEC-1. | G/T mismatch-specific thymine DNA glycosylase. | 0.791 |
APOBEC1 | TET3 | L5KGJ8 | L5L451 | C->U-editing enzyme APOBEC-1. | Putative methylcytosine dioxygenase TET3. | 0.518 |
L5KGL1_PTEAL | NFATC2IP | L5KGL1 | L5KK62 | CREB-binding protein. | NFATC2-interacting protein. | 0.435 |
L5KGL1_PTEAL | SUMO1 | L5KGL1 | L5K0J1 | CREB-binding protein. | Small ubiquitin-related modifier. | 0.928 |
L5KGL1_PTEAL | SUMO3 | L5KGL1 | L5JW83 | CREB-binding protein. | Small ubiquitin-related modifier 3. | 0.416 |
L5KGL1_PTEAL | TDG | L5KGL1 | L5KHS4 | CREB-binding protein. | G/T mismatch-specific thymine DNA glycosylase. | 0.667 |
L5KGL1_PTEAL | UBE2I | L5KGL1 | L5KJ85 | CREB-binding protein. | SUMO-conjugating enzyme UBC9; Belongs to the ubiquitin-conjugating enzyme family. | 0.582 |
MBD4 | APEX2 | L5K8S1 | L5KX77 | Methyl-CpG-binding domain protein 4. | DNA-(apurinic or apyrimidinic site) lyase; Initiates repair of AP sites in DNA by catalyzing hydrolytic incision of the phosphodiester backbone immediately adjacent to the damage, generating a single-strand break with 5'-deoxyribose phosphate and 3'-hydroxyl ends. | 0.453 |
MBD4 | SMUG1 | L5K8S1 | L5L7F0 | Methyl-CpG-binding domain protein 4. | Single-strand selective monofunctional uracil DNA glycosylase. | 0.796 |
MBD4 | TDG | L5K8S1 | L5KHS4 | Methyl-CpG-binding domain protein 4. | G/T mismatch-specific thymine DNA glycosylase. | 0.786 |
NFATC2IP | L5KGL1_PTEAL | L5KK62 | L5KGL1 | NFATC2-interacting protein. | CREB-binding protein. | 0.435 |
NFATC2IP | TDG | L5KK62 | L5KHS4 | NFATC2-interacting protein. | G/T mismatch-specific thymine DNA glycosylase. | 0.682 |
NFATC2IP | UBE2I | L5KK62 | L5KJ85 | NFATC2-interacting protein. | SUMO-conjugating enzyme UBC9; Belongs to the ubiquitin-conjugating enzyme family. | 0.790 |
SMUG1 | APEX2 | L5L7F0 | L5KX77 | Single-strand selective monofunctional uracil DNA glycosylase. | DNA-(apurinic or apyrimidinic site) lyase; Initiates repair of AP sites in DNA by catalyzing hydrolytic incision of the phosphodiester backbone immediately adjacent to the damage, generating a single-strand break with 5'-deoxyribose phosphate and 3'-hydroxyl ends. | 0.542 |
SMUG1 | MBD4 | L5L7F0 | L5K8S1 | Single-strand selective monofunctional uracil DNA glycosylase. | Methyl-CpG-binding domain protein 4. | 0.796 |
SMUG1 | TDG | L5L7F0 | L5KHS4 | Single-strand selective monofunctional uracil DNA glycosylase. | G/T mismatch-specific thymine DNA glycosylase. | 0.749 |
SUMO1 | L5KGL1_PTEAL | L5K0J1 | L5KGL1 | Small ubiquitin-related modifier. | CREB-binding protein. | 0.928 |
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