LRFN5 protein (Pteropus alecto) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LRFN5

Leucine-rich repeat and fibronectin type-III domain-containing protein 5. (702 aa)

Predicted Functional Partners:

PTPRD

0.982

MDGA2

0.771

RABEPK

0.734

PNN

0.718

TANC2

0.657

MDGA1

0.657

L5JW72_PTEAL

0.649

ADGRL3

0.649

ADGRL2

0.649

ADGRL1

0.649

Your Current Organism:

Pteropus alecto

NCBI taxonomy Id: 9402
Other names: P. alecto, black flying fox

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ADGRL1	LRFN5	L5K5D5	L5KL60	Latrophilin-1; Belongs to the G-protein coupled receptor 2 family.	Leucine-rich repeat and fibronectin type-III domain-containing protein 5.	0.649
ADGRL2	LRFN5	L5K400	L5KL60	Latrophilin-2; Belongs to the G-protein coupled receptor 2 family.	Leucine-rich repeat and fibronectin type-III domain-containing protein 5.	0.649
ADGRL3	L5JW72_PTEAL	L5JZL0	L5JW72	Latrophilin-3.	Latrophilin-3; Belongs to the G-protein coupled receptor 2 family.	0.880
ADGRL3	LRFN5	L5JZL0	L5KL60	Latrophilin-3.	Leucine-rich repeat and fibronectin type-III domain-containing protein 5.	0.649
L5JW72_PTEAL	ADGRL3	L5JW72	L5JZL0	Latrophilin-3; Belongs to the G-protein coupled receptor 2 family.	Latrophilin-3.	0.880
L5JW72_PTEAL	LRFN5	L5JW72	L5KL60	Latrophilin-3; Belongs to the G-protein coupled receptor 2 family.	Leucine-rich repeat and fibronectin type-III domain-containing protein 5.	0.649
LRFN5	ADGRL1	L5KL60	L5K5D5	Leucine-rich repeat and fibronectin type-III domain-containing protein 5.	Latrophilin-1; Belongs to the G-protein coupled receptor 2 family.	0.649
LRFN5	ADGRL2	L5KL60	L5K400	Leucine-rich repeat and fibronectin type-III domain-containing protein 5.	Latrophilin-2; Belongs to the G-protein coupled receptor 2 family.	0.649
LRFN5	ADGRL3	L5KL60	L5JZL0	Leucine-rich repeat and fibronectin type-III domain-containing protein 5.	Latrophilin-3.	0.649
LRFN5	L5JW72_PTEAL	L5KL60	L5JW72	Leucine-rich repeat and fibronectin type-III domain-containing protein 5.	Latrophilin-3; Belongs to the G-protein coupled receptor 2 family.	0.649
LRFN5	MDGA1	L5KL60	L5KZW6	Leucine-rich repeat and fibronectin type-III domain-containing protein 5.	MAM domain-containing glycosylphosphatidylinositol anchor protein 1.	0.657
LRFN5	MDGA2	L5KL60	L5JZ81	Leucine-rich repeat and fibronectin type-III domain-containing protein 5.	MAM domain-containing glycosylphosphatidylinositol anchor protein 2.	0.771
LRFN5	PNN	L5KL60	L5KL64	Leucine-rich repeat and fibronectin type-III domain-containing protein 5.	Pinin.	0.718
LRFN5	PTPRD	L5KL60	L5K5N7	Leucine-rich repeat and fibronectin type-III domain-containing protein 5.	Receptor-type tyrosine-protein phosphatase delta.	0.982
LRFN5	RABEPK	L5KL60	L5K750	Leucine-rich repeat and fibronectin type-III domain-containing protein 5.	Rab9 effector protein with Kelch motif.	0.734
LRFN5	TANC2	L5KL60	L5KLS8	Leucine-rich repeat and fibronectin type-III domain-containing protein 5.	Protein TANC2; Belongs to the intermediate filament family.	0.657
MDGA1	LRFN5	L5KZW6	L5KL60	MAM domain-containing glycosylphosphatidylinositol anchor protein 1.	Leucine-rich repeat and fibronectin type-III domain-containing protein 5.	0.657
MDGA2	LRFN5	L5JZ81	L5KL60	MAM domain-containing glycosylphosphatidylinositol anchor protein 2.	Leucine-rich repeat and fibronectin type-III domain-containing protein 5.	0.771
PNN	LRFN5	L5KL64	L5KL60	Pinin.	Leucine-rich repeat and fibronectin type-III domain-containing protein 5.	0.718
PTPRD	LRFN5	L5K5N7	L5KL60	Receptor-type tyrosine-protein phosphatase delta.	Leucine-rich repeat and fibronectin type-III domain-containing protein 5.	0.982