STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
L5KRI3_PTEALSerine/threonine-protein kinase SMG1. (782 aa)    
Predicted Functional Partners:
SMG9
Protein SMG9.
    
 0.979
SMG8
Protein SMG8.
   
 0.966
SMG1
Serine/threonine-protein kinase SMG1; Belongs to the PI3/PI4-kinase family.
 
     0.951
SMG7
Protein SMG7.
   
 0.950
UPF2
Regulator of nonsense transcripts 2.
   
 
 0.941
UPF1
Regulator of nonsense transcripts 1.
    
 
 0.937
RBM8A
RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.
    
 
 0.902
EIF4A3
Eukaryotic initiation factor 4A-III; Belongs to the DEAD box helicase family.
   
 0.880
ETF1
Eukaryotic peptide chain release factor subunit 1.
    
 
 0.856
RPTOR
Regulatory-associated protein of mTOR.
   
 0.813
Your Current Organism:
Pteropus alecto
NCBI taxonomy Id: 9402
Other names: P. alecto, black flying fox
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.