STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SF3B6Pre-mRNA branch site protein p14. (125 aa)    
Predicted Functional Partners:
SF3B1
Splicing factor 3B subunit 1.
   
 0.999
SF3B4
Splicing factor 3B subunit 4.
    
 0.999
SF3B5
Splicing factor 3B subunit 5; Belongs to the SF3B5 family.
   
 0.999
SF3B3
Splicing factor 3B subunit 3.
    
 0.999
SF3B2
Splicing factor 3B subunit 2.
    
 0.998
L5KB37_PTEAL
PHD finger-like domain-containing protein 5A.
   
 0.989
DDX42
ATP-dependent RNA helicase DDX42.
   
  0.987
SF3A2
Splicing factor 3A subunit 2.
   
 0.985
L5KCB3_PTEAL
Small nuclear ribonucleoprotein E; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone 3'-end processing. May indirectly play a role in hair development.
   
  0.967
MFAP1
Microfibrillar-associated protein 1.
   
   0.963
Your Current Organism:
Pteropus alecto
NCBI taxonomy Id: 9402
Other names: P. alecto, black flying fox
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.